Modelling Uncertainty in Deep Learning for Medical Applications
DAAD Funded Project with ETH Zürich and Imperial College London (2020-2022)

Abstract
Deep Learning has emerged as a leading technology for accomplishing many challenging tasks showing outstanding performance in a broad range of applications in computer vision and medical applications. Despite its success and merit in recent state-of-the-art methods, DL tools still lack in robustness hindering its adoption in medical applications. Modeling uncertainty, through Bayesian Inference and Monte-Carlo dropout, has been successfully introduced to computer vision for better understanding the underlying deep learning models. In this proposal, we investigate modeling the uncertainty for medical applications given the well-known challenges in medical image analysis, namely severe class-imbalance, few amounts of labeled data, domain shift, and noisy annotations.
Collaboration:
Prof. Ender Konukoglu, Department of Information Technology and Electrical Engineerng, ETH Zurich.
Prof. Daniel Rueckert, Department of Computing, Imperial College London
Prof. Nassir Navab, Faculty of Informatics, Technical University of Munich
Partner institutions
Publications 3
An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation
Journal of Machine Learning for Biomedical Imaging (MELBA) — Special Issue: MIDL 2020, 2020
Uncertainty-based graph convolutional networks for organ segmentation refinement
To appear in the International Conference in Medical Imaging with Deep Learning, 2020, 2020
Learn to estimate labels uncertainty for quality assurance
arXiv preprint arXiv:1909.08058, 2019






